Changes between Version 3 and Version 4 of jazz/mpdboot

Timestamp:

Jul 2, 2008, 10:57:25 AM (17 years ago)

Author:

jazz

Comment:

--

jazz/mpdboot

@@ +1 @@
+[[PageOutline]]
+
 = How to run R-MPI on multiple machine with normal user permission =
 
-== Issue description ==
-
- * We found that if we run mpd with superuser privilege (i.e. root permission), normal user in each node can not connect to mpd to run R-MPI.
-   * First, we had finished the ip and hostname mapping by modifying /etc/hosts, and then use scp to exchange ssh public key to each compute node.
-{{{
-bio-cluster-12:~# cat /etc/hosts
-X.X.X.12 bio-cluster-12
-X.X.X.11 bio-cluster-11
-X.X.X.10 bio-cluster-10
-X.X.X.9  bio-cluster-09
-X.X.X.8  bio-cluster-08
-X.X.X.7  bio-cluster-07
-X.X.X.6  bio-cluster-06
-
-bio-cluster-12:~# for i in 11 10 09 08 07 06; do scp .ssh/id_rsa.pub bio-cluster-$i:.ssh/authorized_keys; done
-}}}
-   * We had created the same mpd.conf in each node
-{{{
-bio-cluster-12:~# cat > /etc/mpd.conf << "EOF"
-> secretword=this_is_password
-> EOF
-
-bio-cluster-12:~# for i in 11 10 09 08 07 06; do scp /etc/mpd.conf bio-cluster-$i:/etc/.; done
-}}}
-   * The mpd.hosts file is as following:
-{{{
-bio-cluster-12:~# cat mpd.hosts
-bio-cluster-11
-bio-cluster-10
-bio-cluster-09
-bio-cluster-08
-bio-cluster-07
-bio-cluster-06
-}}}
-   * run mpdboot with superuser privilege
-{{{
-
-}}}
- * Reference Solution: [http://structbio.vanderbilt.edu/comp/soft/amber/start.php Getting started with AMBER]
+ * Reference Configuration Guide: 
+   * [http://structbio.vanderbilt.edu/comp/soft/amber/start.php Getting started with AMBER]
 
 == Configure mpd for normal user ==
@@ -47 +12 @@
 login as: jazz
 jazz@bio-cluster-12's password:
+jazz@bio-cluster-12:~$ ssh-keygen -t rsa
+Generating public/private rsa key pair.
+Enter file in which to save the key (/home/jazz/.ssh/id_rsa):
+Enter passphrase (empty for no passphrase):
+Enter same passphrase again:
+Your identification has been saved in /home/jazz/.ssh/id_rsa.
+Your public key has been saved in /home/jazz/.ssh/id_rsa.pub.
+The key fingerprint is:
+XX:XX:XX:XX:XX:XX:XX:XX:XX:XX:XX:XX:XX:XX:XX:XX jazz@bio-cluster-12
 jazz@bio-cluster-12:~$ for i in 11 10 09 08 07 06; do scp .ssh/id_rsa.pub bio-cluster-$i:.ssh/authorized_keys; done
 }}}
@@ -79 +53 @@
 jazz@bio-cluster-12:~$ mpdboot -n 7
 jazz@bio-cluster-12:~$ mpdtrace -l
-bio-cluster-12_54092 (140.129.162.12)
+bio-cluster-12_54092 (10.220.202.219)
 bio-cluster-08_38361 (10.220.202.223)
 bio-cluster-09_52923 (10.220.202.222)
@@ -89 +63 @@
 time for 100 loops = 0.0729811191559 seconds
 }}}
- * 
+
+== Test 1: Run mpd in local host ==