drbl-torque

• 查詢 qmgr 中設定的所有參數

  ~$ qmgr -c 'p s'
  

• Ubuntu 有 ​torque 相關的 package
  • 維護者是​Morten Kjeldgaard - ​Associate Professor, Bioinformatics Research Center, Aarhus University
• 跑 MPICH 工作的 pbs script - MPICH Multi-machine job

  # example3.pbs
  # invoke with
  # qsub -l nodes=2:ppn=1,pmem=1800mb,mem=1800mb,ncpus=2,cput=5:00:00 example3.pbs
  # note that we are using one cpu per node. That :ppn=1 is critical.
  
  # comment these out if you wish
  echo "qsub host is"
  echo $PBS_O_HOST
  echo "original queue is"
  echo $PBS_O_QUEUE
  echo "qsub working directory absolute is"
  echo $PBS_O_WORKDIR
  echo "pbs environment is"
  echo $PBS_ENVIRONMENT
  echo "pbs batch id"
  echo $PBS_JOBID
  echo "pbs job name from me is"
  echo $PBS_JOBNAME
  echo "Name of file containing nodes is"
  echo $PBS_NODEFILE
  echo "contents of nodefile is"
  cat $PBS_NODEFILE
  echo "Name of queue to which job went is"
  echo $PBS_QUEUE
  
  # make sure we are in the right directory in case writing files
  cd $PBS_O_WORKDIR
  
  # Run the mpi job
  # Note: the MPICH mpirun command is in /usr/local/bin
  # use the full path
  /usr/local/bin/mpirun -np 2 -machinefile $PBS_NODEFILE ./dft_mpi