| | 4 | |
| | 5 | = 【說明】 = |
| | 6 | |
| | 7 | = 【安裝】 = |
| | 8 | {{{ |
| | 9 | wget http://soap.genomics.org.cn/soap1/soap_1.11.tar.gz |
| | 10 | tar zxvf sim4.tar.gz |
| | 11 | }}} |
| | 12 | |
| | 13 | = 【路徑】 = |
| | 14 | {{{ |
| | 15 | /opt/soap1 |
| | 16 | }}} |
| | 17 | |
| | 18 | = 【測試】 = |
| | 19 | {{{ |
| | 20 | soap -a soap_test_reads.txt -d reference.fasta -o output.txt -s 10 -r 0 |
| | 21 | }}} |
| | 22 | |
| | 23 | = 【結果】 = |
| | 24 | * output.txt |
| | 25 | |
| | 26 | |
| | 27 | {{{ |
| | 28 | Load in 1 db seqs, total size 4743 bp. 0 secs passed |
| | 29 | total_kmers: 1048576 |
| | 30 | Create seed table. 0 secs passed |
| | 31 | Single read alignment: |
| | 32 | Query: soap_test_reads.txt Reference: reference.fasta Output: output.txt |
| | 33 | 104 reads finished. 0 secs passed |
| | 34 | Total number of aligned reads: 6 (5.8%) |
| | 35 | Done. |
| | 36 | Finished at Tue Sep 15 15:15:19 2009 |
| | 37 | Total time consumed: 0 secs |
| | 38 | }}} |
