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Warning:
Can't synchronize with repository "(default)" (Unsupported version control system "svn": /usr/lib/python2.7/dist-packages/libsvn/_fs.so: failed to map segment from shared object: Cannot allocate memory). Look in the Trac log for more information.
- Timestamp:
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Apr 1, 2008, 3:30:55 PM (17 years ago)
- Author:
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rock
- Comment:
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--
Legend:
- Unmodified
- Added
- Removed
- Modified
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v1
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v1
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| 1 | * run in kerrighed, meet out of memory error message |
| 2 | * Enable Kerrighed USE_REMOTE_MEMORY |
| 3 | {{{ |
| 4 | $ R |
| 5 | # justRMA original limit: 145 CELs |
| 6 | setwd("/home/mnt/chris_rmpi/cel_data_mixed") |
| 7 | rm(list=ls()) |
| 8 | dir() |
| 9 | library(affy) |
| 10 | CELNames<-dir(".", "[.]CEL") |
| 11 | CELNames<-CELNames[1:305] |
| 12 | data <- justRMA(filenames=CELNames) |
| 13 | |
| 14 | $ dmesg |
| 15 | |
| 16 | }}} |
| 17 | |
| 18 | * Don't enable Kerrighed USE_REMOTE_MEMORY |
| 19 | {{{ |
| 20 | $ dmesg |
| 21 | Out of memory: kill process 37159 (avahi-daemon) score 630 or a child |
| 22 | Killed process 37159 (avahi-daemon) |
| 23 | 518032 pages of RAM |
| 24 | 288656 pages of HIGHMEM |
| 25 | 5714 reserved pages |
| 26 | 92 pages shared |
| 27 | 0 pages swap cached |
| 28 | 0 pages dirty |
| 29 | 0 pages writeback |
| 30 | 0 pages mapped |
| 31 | 5771 pages slab |
| 32 | 592 pages pagetables |
| 33 | }}} |